rs49135513 SNP Detail

Summary

• ID
  rs49135513
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103108431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAGAGT TTTGTATCAA
  ATAAAAATTT CCTTCAGAAA TGTCTTTAAA AGAAAACTAA GGTTTTGGTG CCCGTGAACC
  TCTACAACAA AGTACTTAGA AATTAATTAA GCCAAAGGAA AATACGAGAA ACTTAGCTTC
  AGTGATGACA GGAAAAAAAA AATCAGATCT GGTTAATATT CAGTTATTTT TATATATAAA
  M
  GAGAAACATA TATGTTTCTT TGAAATATTC AGGAGTGTCA GAAGCAGAAA ATTATGACTA
  TGTATAATAG TACGAATGAT AGGGTAATAA AAAGATTTGT ACCACCACAA TGTTCAAAGC
  TTTCTTTCAT CATTTATTTT TCCAAGACAG GATTTCAATG TGTAGCCCTG GCTGTCTGGG
  AACTAGCTCT ATAAAACAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147139539	ENSMUSSNP1628746	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss321236299	CHEV_4_102923839	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49135513					SNP	A	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103108431 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr376942	regulatory region 376942	1286 bp downstream
Rr596380	regulatory region 596380	1208 bp distal