rs49131253 SNP Detail

Summary

• ID
  rs49131253
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143626590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGAACCA ATTCCCGAAA
  GTTGTCCTCT GACTTCCACA GACAGGCCAT GGGGTGCCCC TTCCCTACCC CAATAAAAAG
  AGTGAAGAGT GATGGGGAAG CCCAGTGCAC ATGAGAGTAC ACAAGAGAAG ATGCAGTTGT
  GTTTTAGGTA GGCATCACTA CACGTGGAGC AGGACTGTGG TCGTGTCCTC TCGGTGTGTA
  W
  GGGCAGCAGT AGCATGTGAG GCAGAAGCAG GTTGTCTGGA AGGTGTTTAC TCTGAAGGCC
  AGTGCATAGA TACAAGAAGC TGAGCTAAAT GAACAGAGCT GTGGGAGATC TATTTCTGAG
  GGACATTGGA TGCCAGACCG TCAGCCCCTG TTCACTCTGA AGTTCTGACA GATAGCAAAG
  TTAAAAACAA CTCCCAACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60852192	NES15998180	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49131253					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852192	NES15998180	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143626590 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	Intron
Rr624265	regulatory region 624265	1607 bp distal
Rr624266	regulatory region 624266	661 bp distal
Rr624267	regulatory region 624267	1505 bp proximal