rs49130479 SNP Detail

Summary

• ID
  rs49130479
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:81247917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCAGGAAAGC CCCTCAAACA CAGTAAGTTC CTACTGCCCA
  CTCATGTCTG CCCACTCATG TCTGCCCACT CATGTCTGCC CACTAGTGTC TGCCCACTCA
  W
  GTCTGCCCAC TAGTGTCTGC CCACTCAAGT CTGCCCACTC ATGTCTGCCC ACTCAAGTCT
  GCCCACTAGT GTCTGCCCAC TCAAGTCTGC CCACTCATGT C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146851782	ENSMUSSNP3174764	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49130479					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81247917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mpdz	multiple PDZ domain crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr594211	regulatory region 594211			within coordinates
Rr594212	regulatory region 594212			within coordinates
Rr594213	regulatory region 594213			56 bp proximal
Rr594214	regulatory region 594214			224 bp proximal
Rr594215	regulatory region 594215			322 bp proximal
Rr594216	regulatory region 594216			406 bp proximal
Rr594217	regulatory region 594217			462 bp proximal
Rr594218	regulatory region 594218			532 bp proximal
Rr594219	regulatory region 594219			574 bp proximal
Rr594220	regulatory region 594220			686 bp proximal
Rr594221	regulatory region 594221			742 bp proximal