rs49130208 SNP Detail

Summary

• ID
  rs49130208
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33104345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATATTAGA CACTACCAGC
  CCCACCTTCA ATTGCTTTCA AGAGACACCC CCCCCCCATG GCTCATTCAA TGTCCTTGTA
  ACAGCAGTAA AATTTGCTAA TGACTGGTTC ATGTCTCTGT TGTCTGCATC TCCACATTGA
  GGATGCTCTG AGCTGGCCTT ATTACTGCCC AGCATTTTAA ATAGCTCCCC CTGTCTGTAC
  M
  CTTAGACCAT CATTGGCCAA CTTGTTCTTT TTTGAGCTAG ACAGTCACTA GTCAGGCTTT
  GCAGCCATGA CTCGTCTATG GTATACTGTA GTAAACATGG GTGATATAGA AATGTATGAT
  TAAGGCTGTG TTCCACCAAG GCTTTAACAA TGGATTGGAC TCTGAAATTC ATCCCATTTA
  CACGGACCAC AGAATACTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60875840	NES15977693	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	A		A
ss321780614	CHEV_6_33077410	CHEVERUD	SCREENING_POP	f	SNP											C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49130208					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60875840	NES15977693	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33104345 () rs orientation: forward

Symbol	Name	Function Class
Rr628172	regulatory region 628172	475 bp distal
Rr628173	regulatory region 628173	within coordinates