rs49126876 SNP Detail

Summary

• ID
  rs49126876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90567596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTGGGAA GAAGGACAAA
  GAGACCCAAT GAACTCTCCA AGTTTCTAAA GTAAGATGGA AATTTACATG GAGGGCCAAG
  GATATGTATG TCTAAGTAGT CCTAGTCAAG GTGTGGTCCT GCACATCACT GATCCTGTAA
  GGCAGTCGGA CAAGTTGTTA GAATGGTGGG AAATCTTTTT TTCTAGAGAC AGGTCCCCCT
  Y
  TGGCTGGTGC CTTTCACTTC TCCCACCATG ACATCGTTGG GGAACTTTCC ATTTCGTTGG
  AGTCCATTGT TTTAATAGTC TGATAGTCAA ATTGAGAGCC ACAAAATGTT TCGTTAGAAT
  GTCTTCATTT CTGCTGAGTC AGTTATGTTC TCAGCACACA CTTGTGGCTG CTGCTGTCAG
  ACAACCCTGC TGCCCACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135478347	ENSMUSSNP2562178	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49126876					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90567596 () rs orientation: forward

Symbol	Name	Function Class
Gm57853	predicted gene, 57853	1620 bp downstream
Tssr946	transcription start site region 946	299 bp downstream
Tssr30264	transcription start site region 30264	629 bp downstream
Tssr34247	transcription start site region 34247	853 bp upstream
Tssr34248	transcription start site region 34248	841 bp upstream