rs49124038 SNP Detail

Summary

• ID
  rs49124038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150143261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGAGCTT CCAGTGCCCT
  TAACCACTGA GCCATCTCTC CAGCCTCTCC TCATCGGTTG TCTTTGCCAC CCTCTGATGC
  CTTGTTATAG AATTATAACA TAATTATAAT ATAATTATAG AATAAATAAC ATAACTAGTT
  AAAAAATGTC AGCAGAGGCT GGGGGGGTGT AGTTTAGTTG GCAGAGTGTT TGCCTGGCAT
  R
  TACAGACCCC AAGTTTGATT CCCAGCACTT GGAAAAACTG GGCATGATGG TGCACACTTG
  TAATCCCGGA GGGTGGGGCC AGGAGAATAA GTTCAAGGTC ATTCTCAGCT ATTCAGTAAA
  TTAGAGTTCA AGGCCAGCCT AGGCTACATG AGACAGCAAA ACAAAAGCCA AATAATTCAT
  TTATAAATGA AGGTTTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148046396	ENSMUSSNP5960024	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321427861	CHEV_4_149432913	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49124038					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150143261 () rs orientation: forward

Symbol	Name	Function Class
Gm13067	predicted gene 13067	within coordinates
Rr398877	regulatory region 398877	1094 bp upstream
Rr605159	regulatory region 605159	1038 bp distal
Rr605160	regulatory region 605160	732 bp distal
Rr605161	regulatory region 605161	1091 bp proximal