rs49121150 SNP Detail

Summary

• ID
  rs49121150
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121995795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGAGACCA GAATTTGAGA TCACAAAGCT CTGGGGCCTC
  TAACAAGATC TTGATTCATC CGTACCTCTC GCTAAGCTCT TACTCAGGGC CAAGAAGCAG
  W
  AAGACATGGT TTTCATTCTG TGGGGCGTAA AGTCCAGCCG GAGAAGGAAG GAAGGATGGA
  CCAAATGGTT ATGATTCCCT GTGTGTGTAA GGGGTAAGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135736976	ENSMUSSNP1202002	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320909555	CHEV_3_121905064	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49121150					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121995795 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	1700 bp proximal
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	134 bp proximal
Rr584258	regulatory region 584258	1478 bp proximal