rs49116376 SNP Detail

Summary

• ID
  rs49116376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38035258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG TTACCTTAGT TAATATAATG
  Y
  TTTCCAGTGC CATCCACTGT TTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134819193	ENSMUSSNP4977718	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320714503	CHEV_3_37880031	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49116376					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38035258 () rs orientation: forward

Symbol	Name	Function Class
Gm20755	predicted gene, 20755	within coordinates
Gm42751	predicted gene 42751	1683 bp upstream
Rr575602	regulatory region 575602	939 bp distal
Rr575603	regulatory region 575603	1019 bp distal
Rr575604	regulatory region 575604	718 bp proximal