rs49111004 SNP Detail

Summary

• ID
  rs49111004
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56020922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGAACA ACCATCTGCA
  ACTCCAGCAG ATGAGAGTAG ACACCCACTG TATCAAATGC ACAAAACCCC ACAGGAACAC
  ATAATTAAAA ATAATGAAAA CAAAACAAAA CAAAAACCAA CCACAAACTC TTCCTACTGT
  GTAGCAAATT ACAAAGTTTC TCTTTGTTCC AGTGTCCTCC TACATAAGAA TTGTTTGGTA
  T
  TGGGTGAACC GAGGACACTT GGTGAATGTG ACAGGCCATG ACCATGAGTC CTCTGTACTA
  TGAGAAGGTG AGGACTCTAT GTGATCTGTG TTTCAGGATC CCCAGGCAGG TGGGCTGGGT
  AGGCTGTGTG TAAGCCTGGT GGACACAGGT GAGGTTATCG AGAAAATAAG CATAAGCCAT
  CAGGAGTCTG CAGGACCTGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133220304	ENSMUSSNP6015038	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49111004					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56020922 () rs orientation: forward

Symbol	Name	Function Class
Rr631042	regulatory region 631042	336 bp proximal