rs49110020 SNP Detail

Summary

• ID
  rs49110020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115669043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAATAAG CTTTCATAAT
  TATACTAAGA AGAGAAACAG GCTTGGGACA AATTTGTGTT CAAGGAAAAA CATTCAGGTC
  CAAGAATGAA GCCACAGGTG TGCACTATGA TAAGACAAGG CCATGTAAAA ACTGTTGCTT
  TGAACTTATA ATGAACTTGC AGTATGAAAC ACTGCTTTGA GCTTGTTATT GATATTCTTC
  Y
  GTAACTCCCC TTTTAACATG TTCTCTATGA GGTAATTTTT TCTTACATAG AGAACTTTTT
  AAGCTATAAA AAGGCTGAAA GCAATAAAGA AAGGTGGTGC AGCCACTATC TGCTTCACCT
  GGTTTGTGTG AGTGACTTCT TCCCTTTCCT TTTTCTCTCC AGTTCAAAAA GAGTTAACTA
  GCTCCAAGCT TCTCACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133573201	ENSMUSSNP640130	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49110020					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115669043 () rs orientation: forward

Symbol	Name	Function Class
Rr637022	regulatory region 637022	539 bp proximal
Rr637023	regulatory region 637023	1012 bp proximal
Rr637024	regulatory region 637024	1275 bp proximal