rs49107679 SNP Detail

Summary

• ID
  rs49107679
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89255813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTGAA AACTGGAGTG
  TCTGTTGTCT GTCTGTCTGT CTGTCTGTCT GTTAAGACGG GGTCTTACTG TGTAGCTTTA
  TCTATCCAGG AACTCTCTAT GTAAACCAAG CTGGCCACAA ACTTGTAGAA ATGTTCTGGG
  ATTAAAGGTA TGAGCTAGCA TGCCTAGCAA AAGTAGAACT TTCTAGAAAG GAGAAAAAAA
  T
  ATATATATAT GCCATTCTTT TTTGATAACA TGACAAATAA TAAAAATAAA ATTCTTAATT
  CAAGGATAGA TCACTTTAAA ATCCTGGCAT GTTGCAGAAT TAAACATAAA AGAAAAATCA
  CGGACTTCTA GGAGCTGTGT GTTTCAGGTG GAAATGACTC TTTGACAAGG GTAGAAGATC
  ACAAAATTCA GAGGAAGAGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss133371272	ENSMUSSNP4164553	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs49107679					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89255813 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr634089	regulatory region 634089	1621 bp proximal