rs49105659 SNP Detail

Summary

• ID
  rs49105659
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147518140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAGTGAT TTAAGTATAC TTGGGCTAAT TAGGTTCATG
  GTTTCCAACT GGTCATAACT AAGGTCATAG GAAATTAAGG TTGAATCAGA GTGGTAATTA
  A
  TTGGTTTCAT GTGGTACACT CCTAAGAGAC ACTCATGTTC TCTACACAAT CTCTTCCAGG
  TAACAGTAAA AAAGAGTAGA CATGATTGGT AATGACAAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147960351	ENSMUSSNP5217612	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49105659					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147518140 () rs orientation: forward

Symbol	Name	Function Class
Rr398818	regulatory region 398818	218 bp upstream
Rr398819	regulatory region 398819	617 bp upstream
Rr604487	regulatory region 604487	1128 bp distal