rs49105624 SNP Detail

Summary

• ID
  rs49105624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130052091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCCAGACT GGCCTTGAAC TCAGAAATCT GCCTGCTTCT
  GTCTCCCAAC TCTTGGGACT AAGGGTGTGT GCTACTGCGA CCCTGTTGAT TTCATCTTTA
  Y
  AGAAGCTTTT TAGCTTTCTC TATTCCCATC AGCCAAGTCT TAGAATTGCG TATTGTAACA
  CTAGAGTCAT TTCCAAACAC CCCTTGCCGG TGTCTCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135893303	ENSMUSSNP1461345	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49105624					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130052091 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585148	regulatory region 585148	1856 bp distal
Rr585149	regulatory region 585149	1431 bp proximal
Rr585150	regulatory region 585150	1850 bp proximal