rs49102503 SNP Detail

Summary

• ID
  rs49102503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141169247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGGAAA ATTATAGAGA
  AAACCACTAG ATTTAACCAT AGTCTCTTCA TGATATTGAC AGGTTATTAG CACCATCCCC
  CCATGGTAGC CATTGTCTTC ATAAAACCAT TTACATTCTG AGGACAAGTA ACATAAACGT
  TAGAAATTGC CATTTCACAG AAGTCACACT TGGATGTGTG TAAGAGTTAA TGACTACAAT
  Y
  TTGAGAACAT AGATATAAAC AAATTCTTGA ACTTAACTGA GGAAGGTACT GTTGAACTGA
  GGTAGCAAAA AAGGCTGAGT GTCTTCTAGA TCAGAACAAC AGTCATCAAT GACAATGCCG
  GGCATTTTAC CTATAGTTAA TACTTTCTAA CCTCAGGAAA CCTTATATCT CATTGCTTCT
  AATAAACCCA CTTTACAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092728	NES16592213	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	C		T
ss320992371	CHEV_3_141126450	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49102503					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092728	NES16592213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141169247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	1154 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	639 bp distal
Rr586319	regulatory region 586319	1240 bp proximal
Rr586320	regulatory region 586320	1496 bp proximal
Rr586321	regulatory region 586321	1837 bp proximal
Tssr1065	transcription start site region 1065	1209 bp upstream
Tssr1066	transcription start site region 1066	1775 bp upstream
Tssr32031	transcription start site region 32031	1630 bp upstream
Tssr32032	transcription start site region 32032	1693 bp upstream
Tssr32033	transcription start site region 32033	1885 bp upstream
Tssr32034	transcription start site region 32034	2000 bp upstream
Tssr35916	transcription start site region 35916	1089 bp downstream