rs49101272 SNP Detail

Summary

• ID
  rs49101272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127152183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTAAGACT CCATAAGGGA ACATTAATAG GTGCAAACTT
  GTGTCACTTG AGAGTGAGCA CAGCTGTTCT GACTTCATCT CTCTTAATCA CTATCTTTTC
  R
  TTGCTGTGAA GAGACACCAC GACCACAGCA GCTCTTAGAA AGGAAATGAT TTAATTGGAG
  GCTTGCTTAC AGTTTCAGAG TGATCAAGGT TCAAGGTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147525523	ENSMUSSNP4580405	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49101272					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127152183 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	1171 bp downstream
Rr397284	regulatory region 397284	471 bp upstream
Rr564490	regulatory region 564490	1183 bp distal
Rr564491	regulatory region 564491	1395 bp distal
Rr564492	regulatory region 564492	72 bp proximal
Rr564493	regulatory region 564493	1113 bp proximal