rs49099411 SNP Detail

Summary

• ID
  rs49099411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57599935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGATCCT TCAAAAGCTA
  TGAAAATCCT CATTGTGCAC TTATCTTCTC AAAAACAAGA CAAACAAAAC CCCTGTTTTT
  AAAAATAGCT GAAAAAATTT CCAAATTCAC GATTGAGGAC CAAATTGATG GCCAGAGGCA
  GCTGTCATTG TCTATTCTCC ACAGCGACTT GAAAGAGCAT TAAAGAGGCA TATCCAAGGT
  Y
  GGTATCCCAG TGTAGGACAG CCTAGACAGT GGCTGTGTTG GAGGAAATGT TTCTCTCAAC
  ACAATCACAA TAGCCACCTG GTTCTCAGAT TACAGAAACC AGCACACTTG ACAATGGCCA
  AGGCAAGTAT GAGCAGGCTT GTGACTTATA GAGCAAAGAT TCCACACACA AGTGACACTT
  TGGTGTTGTA ATTGCCATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60414472	NES15915185	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49099411					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60414472	NES15915185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57599935 () rs orientation: forward

Symbol	Name	Function Class
Ankub1	ankyrin repeat and ubiquitin domain containing 1	mRNA-UTR
Rr577155	regulatory region 577155	386 bp distal
Tssr33337	transcription start site region 33337	13 bp downstream