rs49097697 SNP Detail

Summary

• ID
  rs49097697
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104538793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGAGCA AAATTAGATG
  ACCAACAAGC TCCAGACTGT GCTGTCTCTG CCTCCACAGT CCTCGGATTA CAGTGTGTCC
  AAAACTACAG ACATCCAAAC TTAGGTCCGT ATTCCTATAC GGCAAGCACT TCACCAACTT
  AGCCCCTACC CCCAGCTTTC TTTTTAAAAA TGTAGTGTAT GTAGAGTGTG TGTGTGTGTG
  G
  GGGGGGGGGT GCCATGGTAC AAACTTGAAG GCCAGAATAC AACTTTGTGG AGAGGATTCT
  GTCCTTCCAC TTTTACATAG TTTTTGAAGT TGAACTTGGG TGGTCAGACT TTCACAGAGC
  CTTCTGGCTG GACCTAGTCC CAAGTTCCTA ACTCCTCTAC TATAAATTGC CACCTTCTGT
  GTTCCCAAGC TCTTCTTTGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135570080	ENSMUSSNP5533493	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49097697					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104538793 () rs orientation: forward

Symbol	Name	Function Class
Gm65207	predicted gene, 65207	within coordinates
Rr582553	regulatory region 582553	165 bp distal
Rr582554	regulatory region 582554	1097 bp proximal
Rr582555	regulatory region 582555	1547 bp proximal