rs49094848 SNP Detail

Summary

• ID
  rs49094848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17763414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGACCCTTTC TTGCCATAGC AACTTAGTTT TTCTTCTTGC
  TTTTTATTTT CATTTTAGTA ATGGAAATGT TCATCTTTTA GGCACTTTGG CCAGTATGAA
  R
  ATTTTTTTTT TTCTGATGAA TGCCTTCAGG ATTTTCTTGA CGTGACATTT TTAAGTAAAT
  AAAATTAAAT TCTGTCTGTG GAATTAATGT TCTCTCTCTC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133022202	ENSMUSSNP4198227	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49094848					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17763414 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52895	predicted gene, 52895			1266 bp upstream
Rr626856	regulatory region 626856			520 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			530 bp downstream