rs49092107 SNP Detail

Summary

• ID
  rs49092107
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133233162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCATTTC CAGGAGATCC
  AAACCTTCTT CTAGCCTCTT ATAGCACCAG ATACCATGTG GTGCAAAGAT ATACATGTAG
  GGAAACACTC ATACACATGG GATAAAATAT TAATAATAAA TAAGAAATGT GTAAAACACT
  GGGAAGTGGT GGCACACACC TTTAATCCCA GCACTTGGGA GGCAGAGGCA GGCAGATTTC
  K
  GAGTTTGAGG CCAGCCTGGT CTACAGAGTG AGTTCCAGGA CAGCCAGGAC TATACAGAGA
  AACCCTGTCT CAAAAAGAAA AAAGAAAGAA AAAAGAACAG AAAAGAAAAG AAAAAAAGAA
  AGAAAACAGA AATGTATAAA ACAAAATTCA AAGTTTCGGG GTTTGGGTTT ATTTATTTTA
  TTTAATGTAC ATGAGTATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss135918703	ENSMUSSNP4295760	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49092107					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133233162 () rs orientation: forward

Symbol	Name	Function Class
Rr375761	regulatory region 375761	1864 bp downstream
Rr585560	regulatory region 585560	1938 bp distal
Tet2	tet methylcytosine dioxygenase 2	Intron