rs49088503 SNP Detail

Summary

• ID
  rs49088503
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117668694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTGGGGC TCCATAGCAG
  GAGCTCACAA CATGACCCAG GCATTCTTTC CCTTAGAATG ATACGACCCT TGGCTGATGT
  GTTGTTAGTG ACATTGGTTT CATCATGATG TTTTTTTTTT TTATTTAAGA TTTATTTATT
  GGTTATATGT AAGTACACTG TCGCTGTCTT CAGACACTCC AGAAGAGGGA GTCAGATCTC
  S
  TTACAGATGG TTGTGAGCCA CCATGTGGTT GCTGGGATTT GAACTCCGGA CCTTCGGAAG
  AGTAGTCGGG TGCTCTTACC CACCAGCCCG TGATGGTTCT TTAACAACAA CCCAGAGAAA
  GCCATACAGT GTTGAGTTGG GTCTTGGGTC ATCATCCAAA CTTTAAGAAT GATCTATGTA
  CTTGTGACCT GGCACCTGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147294320	ENSMUSSNP4187531	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49088503					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117668694 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	1346 bp downstream
Rr598215	regulatory region 598215	1677 bp distal
Rr598216	regulatory region 598216	357 bp distal
Rr598217	regulatory region 598217	5 bp distal
Rr598218	regulatory region 598218	1399 bp proximal