rs49087519 SNP Detail

Summary

• ID
  rs49087519
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109246705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT GATCCTCCTG TAGTTTCAGG
  A
  TTTCAAACCT ATTATGGTCT AGGAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135586759	ENSMUSSNP3595405	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49087519					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109246705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13716	CpG island 13716	739 bp proximal
Rr583407	regulatory region 583407	774 bp proximal
Tssr31282	transcription start site region 31282	950 bp upstream
Tssr31283	transcription start site region 31283	1075 bp upstream
Tssr31284	transcription start site region 31284	1238 bp upstream
Tssr31285	transcription start site region 31285	1273 bp upstream
Tssr31286	transcription start site region 31286	1282 bp upstream
Tssr31287	transcription start site region 31287	1314 bp upstream
Tssr31288	transcription start site region 31288	1342 bp upstream
Tssr31289	transcription start site region 31289	1365 bp upstream
Tssr31290	transcription start site region 31290	1404 bp upstream
Vav3	vav 3 oncogene	1264 bp upstream