rs49087216 SNP Detail

Summary

• ID
  rs49087216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97835654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCTCGG GAAGATGTGA
  TGTAATTACA TTTTAATTAT TTTTTAAGTC ACCATTTTTA CTGGCTGCAG AATGTTTCAC
  AGCATGATTT GATTACAGTT TATTCATGTA AGCTGCCATT GATAGACTCA GATGGTTCCA
  CTTTTCCAGC TAGTGAAATC AATAGCACTG CATATTTTAA CTCCATTTAA AAGAGTATTG
  R
  AGTACTTTCT ATGTGCATAT TTTGCTTTTG TTCTAGTTTT GTTCCCATCT CCAAGCTCAT
  TCAAGTCTTT AACATTTCTA AGTTGCTAAT GGACCTTCTG CAATCCTTGA ATTTGGTCCA
  TCTGGGCTAT CCCGTGCCAT TTCTTGATCT CAAAACTTTC ATCCTTTGCC TCAGGTGCTT
  GTTTACTGAT CATGGCTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60915468	NES16223102	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49087216					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915468	NES16223102	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97835654 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635230	regulatory region 635230	665 bp distal