rs49087152 SNP Detail

Summary

• ID
  rs49087152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108668317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTACA TATTAACAGA
  AGAATCTGGA GTCAAGACAT GCGTCTACCT GCATAAATCC CTTTCCCTGG TATTTACAGA
  ATACAATCTT GTCTTCCGTT GCGTAGAAAC ATAAACTTCC CCCTGAATGT ATTTCCTATA
  TCTCCATGTC CTTTTCCCCT TCAGTTACGA TCTATTGTCC AGGCACATCC TTGAGCCCCC
  R
  ACTTTACATT ACCTGGGGGC TGCTCTCTGC TCAATATTGT TCCTGCTGGG GCTTGCATCC
  AGGGCCGTCT GTAGGCTAAG CGTGGTGGCT GGAAGGAGAC TGTCTTCCAC AGGTTCATGT
  ATTGGAGCAC TTGGTCCCCA GATCGTGCCT CCGTTTCTCT GTTTGGGGAG ATTTAGGAGG
  TGTGGCCTTG CTGGAGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135585699	ENSMUSSNP6016360	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49087152					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108668317 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aknad1	AKNA domain containing 1			Intron
				mRNA-UTR
Rr583305	regulatory region 583305			751 bp distal
Rr583306	regulatory region 583306			1449 bp proximal