rs49085423 SNP Detail

Summary

• ID
  rs49085423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150588459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCCAGTA TGGGTTGGCT
  ACACAAATGG GTTGCAGAGC AGCCTGGTTG GGAGAGACTA TGTCTTTTTA AAAAAATCAC
  AACTTCGCTT CTCTTGTCAT AGAGGGAGGG GCGTTAAGAA ACCAAAAGCG CTCTTTTGGT
  CACATCTGGC CTGCTCTTGG AATCAAAACC CAAACCCTAC AAACGAGAAG AAAGGCGACA
  R
  GCCATTAGCA GAGACGAAGG AAGCTCCAAC TGCGGAGAAA AGCCAGGTTC CCGGAAAGAG
  CCCCCACCTC GGCCACATGC TCCCATGTCC TCAATCTAAC GTCAAGAGCC AACCAAGCAA
  GTGCAGCAGG GTGGACCGAC GTCGTCAGCG CCCTACCTGC CGGGCCCCCA AGGCCTCCTG
  ACCGGGGGCG GGCTGCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60859604	NES15988827	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49085423					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60859604	NES15988827	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150588459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17110	CpG island 17110	15 bp proximal
Gm71525	predicted gene, 71525	269 bp upstream
N4bp2l2	NEDD4 binding protein 2-like 2	Intron
Rr399543	regulatory region 399543	650 bp upstream
Rr625784	regulatory region 625784	within coordinates
Rr625785	regulatory region 625785	280 bp proximal
Rr625786	regulatory region 625786	594 bp proximal
Rr625787	regulatory region 625787	608 bp proximal
Rr625788	regulatory region 625788	873 bp proximal
Rr625789	regulatory region 625789	1401 bp proximal
Tssr49954	transcription start site region 49954	303 bp upstream
Tssr54667	transcription start site region 54667	218 bp downstream
Tssr54668	transcription start site region 54668	321 bp downstream
Tssr54669	transcription start site region 54669	423 bp downstream
Tssr54670	transcription start site region 54670	566 bp downstream