rs49085185 SNP Detail

Summary

• ID
  rs49085185
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77003212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCTTCCT CCAACAACAG GGCAGCATGG CCTTCCTGGC
  CTGGCCTTTA ACAAAATCAG AGACATTGAC CCCTATCAAA CAGCAAATCC AGATTCCAGA
  M
  AGCCATTCGC GCTGGCCTAG TGACAATTTC CCAAATTCCC CAGCCCTCAT CCTTGCCCAT
  CTCCACTGTC CTTCTTAGCC TGGCTCATTT CCCAGACCAC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373582	NES15269444	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49085185					SNP	C	C	C	C	C	A	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373582	NES15269444	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77003212 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	861 bp upstream
Cpgi1754	CpG island 1754	670 bp distal
Gm67721	predicted gene, 67721	175 bp downstream
Rr384956	regulatory region 384956	within coordinates
Rr434420	regulatory region 434420	728 bp distal
Rr434421	regulatory region 434421	522 bp distal
Tssr94211	transcription start site region 94211	732 bp downstream
Tssr98227	transcription start site region 98227	854 bp upstream
Tssr98228	transcription start site region 98228	822 bp upstream