rs49084008 SNP Detail

Summary

• ID
  rs49084008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120526621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTCTGTAAGT GAGGAAGCAG CTCAGGATGA ATTAATAAGT
  GGGTAGTTTA ACTACCAAGT AGGAGGGAAT GCAAGACCAC CGCACCAAGC CATGCGTGGT
  R
  ACCCACACCT GTAATCTGAC ATTGAGGAAG CTGAGTTCGA AGTCAGCCTG CACTGCAGAG
  TGAGTTCTAG ACTAACCTAT AAGATTAGTA ACCTGGACCC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147346045	ENSMUSSNP6454254	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49084008					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120526621 () rs orientation: forward

Symbol	Name	Function Class
Cited4	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	1604 bp downstream
Cpgi14717	CpG island 14717	1729 bp distal
Rr598841	regulatory region 598841	672 bp distal
Rr598842	regulatory region 598842	127 bp proximal
Rr598843	regulatory region 598843	1023 bp proximal