rs49081928 SNP Detail

Summary

• ID
  rs49081928
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38937758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAA GACTATACAC TTATTTCACA
  T
  ATTAAACACT CCATTCTACA GAATG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134846103	ENSMUSSNP5618532	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320724079	CHEV_3_38782531	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49081928					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38937758 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	1373 bp proximal
Gm65329	predicted gene, 65329	1057 bp downstream
Rr575715	regulatory region 575715	292 bp distal
Rr575716	regulatory region 575716	584 bp distal
Rr575717	regulatory region 575717	1 bp proximal
Rr575718	regulatory region 575718	864 bp proximal
Rr575719	regulatory region 575719	1927 bp proximal
Tssr28930	transcription start site region 28930	1703 bp upstream