rs49078456 SNP Detail

Summary

• ID
  rs49078456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85354405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTCCAT CCTCGGTCTT
  ATTAGTTCTA CTACTGGCCT TCCTTTATTG GGTGGTTCAC AGGGCTAGCC TTTCTTTCTT
  ATGTAGTGCC CAAATCTCTA CTTACCAGGC CACATCCTCC ACTGGGAACT CAAAAGGGGG
  AAGTCTGCAT ACCAGACAAA GGAGACTCTT GGGAGCACTC CACTACAGCC CATCTGGTCA
  R
  TCTCCCACAG TAGGGTGTGT GATCTCCATC ACATTTTAGA TAGAGTCTCT TTGTTGTTTT
  CTCCTAGACT GACTACACCA AGAATGCTGG CCCTCGAGCT TCCCGGAATT CTTTCTTCAC
  CTTTCATCTC TGAAGTAAGA ACACTGGGAG TACAAATATG TGCTTTGTAC CACACCCAGC
  TTTATGTGGG GTGTGGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906844	NES15957585	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49078456					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906844	NES15957585	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85354405 () rs orientation: forward

Symbol	Name	Function Class
4933423K11Rik	RIKEN cDNA 4933423K11 gene	within coordinates
Rr633194	regulatory region 633194	1831 bp distal
Rr633195	regulatory region 633195	1905 bp distal
Rr633196	regulatory region 633196	within coordinates