rs49078369 SNP Detail

Summary

• ID
  rs49078369
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116131707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCACTTA AAAGTCAGTG
  TACTTGAACC ACAGAAAGCG CGTTCACAGA AATCATGAGG TCCTAGAACA TCAGAGTTCC
  AGGGAGGACA AAGGGAAGAA AAGGGGCTTA TGAGAAAGGT TGAGAAAGAT GACCAGAGAT
  TGCAAGAGCC ATCACATTAC ATAATGAGGA AGGAAAATGA CTGACTTCAC AATCAGAGGC
  W
  GGCCACAGGA CCGAACCGGG CCTGTTTGGT TTGGGACACT CCTATGTTGA CAGGAGCATC
  AAACTGTAAT AGTTACAGAG ACCACACCTC AAATAGTTTA GAAGTTGAAG GAAGAGGAGG
  AGGGAGGGAG GGAGGGAGGG AGGGAGGAAG GGAGGTGGAA GGAGGAGGAG GAGGAGGAGG
  AGGAGGAGGA GGAGGAGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60437479	NES15945674	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs49078369					SNP	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437479	NES15945674	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116131707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr375620	regulatory region 375620			1958 bp upstream
Rr583700	regulatory region 583700			572 bp proximal