rs49076152 SNP Detail

Summary

• ID
  rs49076152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131110695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGTGGGA GGAGTTGGAG
  TTGTCTCAGC TAAGACAAAA CCTATGTGAC AAAACCTATG TGATCTATCA TGTAGGTGCT
  GGGAATTGAA CCTGTGTCCT GTGGAAGAGA AGCTGGTGCT CTTAACTGCC GAGCCATCTC
  TCCAGTCACC ACATCTTTTA ATATGTCCTC TAAAAACTGA AGAACATATC TTCTGGGTGG
  R
  AAGGAACCCT GACACCTATT TTGAAAGGCT GCCGACATCA CGTGATTAGC AGATACAGCT
  TTAGGCTTTT GTAGGTCAGT AACCAAGTAC ATACTCTGCT GAACAGGAAC AAAAATTAAT
  TTTAATTGCC AACCAGGCAT TCCAGTTTAA GTAAATTCAG GTCAACAAGT CATATTCTGG
  AGTGAGAATT TTGGTTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61081002	NES16597764	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49076152					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61081002	NES16597764	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131110695 () rs orientation: forward

Symbol	Name	Function Class
4930534D22Rik	RIKEN cDNA 4930534D22 gene	within coordinates
Rr585332	regulatory region 585332	625 bp distal
Rr585333	regulatory region 585333	431 bp proximal
Sgms2	sphingomyelin synthase 2	1939 bp downstream