rs49075457 SNP Detail

Summary

• ID
  rs49075457
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116454430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATAATCCCAG CACTTGGGAA GCACAAGTAG GAGGGTCCTA
  AGTCTGAAGT CTTTCTGAAC GACCTGAGAT CTGTCCTCAG ACACAAAGCA AAATCCCAAC
  G
  ACAACAAAAA CATGTATCTC TTCTCAAAGT CAGAATTTGG AATGACTCTT CTGGAGGCTG
  ACATGAGCTC TAAGTTTGAT CCCTACTATC TCATCAAAAA A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss135670752	ENSMUSSNP2133297	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs49075457					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116454430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13738	CpG island 13738	989 bp proximal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr397966	regulatory region 397966	1719 bp upstream
Rr583758	regulatory region 583758	653 bp proximal
Rr583759	regulatory region 583759	1886 bp proximal
Tssr31364	transcription start site region 31364	980 bp upstream
Tssr35323	transcription start site region 35323	1440 bp upstream
Tssr35324	transcription start site region 35324	1311 bp downstream
Tssr35325	transcription start site region 35325	1489 bp downstream
Tssr35326	transcription start site region 35326	1756 bp downstream
Tssr35327	transcription start site region 35327	1773 bp downstream
Tssr35328	transcription start site region 35328	1790 bp downstream
Tssr35329	transcription start site region 35329	1809 bp downstream
Tssr35330	transcription start site region 35330	1862 bp downstream