rs49074757 SNP Detail

Summary

• ID
  rs49074757
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141173916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCTGCC TGGCAGCTCT
  CCCTGGGAAA GCTGAGATCA CAGCTGTGCC CCACTGCATT GTGGGCTTTG AGGAATCAGA
  CTCAGGTTGT CAGGCTTGTC GGGCAACCCT GTCCTTTACT GACGGATGTT GGGAGGAAGC
  AGGACCTGGA GCACAGTGAA TAAGAGGGAA GATTTAGTAC TCCCCTCCCC CAAGACAGGG
  K
  TTCTCTCTGT AGTCTGGCTG TCCTCGAACT CGGTTTGTAG ACCAGGCTGG CTTTGAGTTT
  ACAGAGATCC ACCTGCCTGT GCCTCCACAC CCAGTGGGAA AGATTTAGCT TTAGATGGGT
  GGGGAATGTG TGCTTGAGCA AAGGGAAGCC TGAGGTGGTG TGTGCCTAGA ATCCCAGCAC
  TAGGGAGGCC AAGACAGAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737310	ENSMUSSNP3018863	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49074757					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141173916 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			901 bp distal
Gm42337	predicted gene, 42337			Intron
Rr603768	regulatory region 603768			1941 bp distal
Rr603769	regulatory region 603769			892 bp distal
Rr603770	regulatory region 603770			1479 bp distal
Tssr40079	transcription start site region 40079			1891 bp downstream
Tssr44320	transcription start site region 44320			1165 bp upstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant