rs49069856 SNP Detail

Summary

• ID
  rs49069856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67421759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT AAGGAAATAA GGCTGAGAGT
  Y
  ACGAAGGTGA TTCACATCAT CTGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135258384	ENSMUSSNP6026373	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49069856					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67421759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13247	CpG island 13247	275 bp proximal
Gm40067	predicted gene, 40067	823 bp upstream
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	Intron
Rr577934	regulatory region 577934	1177 bp distal
Rr577935	regulatory region 577935	1402 bp distal
Rr577936	regulatory region 577936	1087 bp proximal
Rr577937	regulatory region 577937	1126 bp proximal
Rr577938	regulatory region 577938	1224 bp proximal
Tssr33502	transcription start site region 33502	1042 bp downstream
Tssr33503	transcription start site region 33503	1061 bp downstream
Tssr33504	transcription start site region 33504	1200 bp downstream
Tssr33505	transcription start site region 33505	1237 bp downstream
Tssr33506	transcription start site region 33506	1278 bp downstream