rs49067309 SNP Detail

Summary

• ID
  rs49067309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185415727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCAGAGA TGTGCACTGA
  GGAGCTCTGC TTTCCCATTT ATTGTTTAAT CTCCCAGGCA TGTGTTTCTT CATTTGTAGG
  GTGGCAATTC TTATATTTGA GTTGTTTGAG GCTTAAGAAA ATGTATGAGG AACGTTTATA
  ATCTAAGTGT GAAAACAACC CAAAGACAAA CCTCACCTTC CCAAGCATAG CTGCAAAATA
  Y
  TGTCAAAAAT ATGTTCAGGA TTTCCCCAAG TGTGGTGGCT TTTGTTTGTA ATCCTAGCAT
  TTGGGGGCCT GAGGCAGGAG GATTGCTTTG AATTTGAGGC CACTATGGGC TATACAGTGA
  GTTCCAGATT AGCCTGGGCC ACAGAATGAG ACCTTAAGAA ACCATGATGA TAATATGTGC
  ATGGTTTTAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146440041	ENSMUSSNP5452893	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320178618	CHEV_1_187507409	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49067309					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185415727 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	970 bp distal
Rr425421	regulatory region 425421	1422 bp distal
Rr425422	regulatory region 425422	1268 bp proximal
Rr425423	regulatory region 425423	1456 bp proximal