rs49066479 SNP Detail

Summary

• ID
  rs49066479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112366644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGTATGT TTCAGGACAC
  TCCTTAACCA AGAAAGGCTC ACCATCACTC TGGAAAGCTT GGGTGGCCAG AGACAGCTCC
  TGTGCTGTGT AAGCTGCCTT CCCCCTCCCC ACTCACTGGC TCCCTCAAGA GGACGCTGGG
  ATCAGCAGCA GAAATGCCAC ATAAGCTTGA CTTAAAAACA GACAACTCAA TGCTCATACA
  Y
  GGATTTTTAT TATGGGTAAA AGTACTGAAG TTCCTCACCG GGAGAACTGT AGACATTTTA
  TCTCTGCAGA CAGAGGAGTA AGAACAGCAT CCTGAGGAAG CCCCCACAGT CTGTGGGTAC
  TTGCTTACAC TGAGCAATAA TTCCAAGGCA GGGGAATGGC ATTCATGGCT ACAGATGACC
  ACCGATGTGT GTGCTTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60929791	NES16197532	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49066479					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60929791	NES16197532	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112366644 () rs orientation: forward

Symbol	Name	Function Class
Gm38873	predicted gene, 38873	713 bp upstream
Rr636339	regulatory region 636339	1379 bp distal
Rr636340	regulatory region 636340	61 bp distal
Ssu2	ssu-2 homolog	1660 bp upstream
Tssr62400	transcription start site region 62400	1646 bp upstream