rs49058681 SNP Detail

Summary

• ID
  rs49058681
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147892635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTGGTCAGG ATGTATTATT TTATAAAACT TGCCCACGTG
  GTACAATTAG TTTTTCTCTG GCAACACTCA GGGTGCACAG ACCCACTATA TATCTTCTTC
  W
  CAGCTGTACC TTACTGCAAT CCTGTCTTCA TGTTTTATTC AAACCTAAGG TGTAATATTA
  ATAACTAAGC CTATGAAGAC TCATTTCTCA ATGCTGTATT T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147982592	ENSMUSSNP5339250	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49058681					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147892635 () rs orientation: forward

Symbol	Name	Function Class
Gm20707	predicted gene 20707	within coordinates
Rr377386	regulatory region 377386	within coordinates
Rr604501	regulatory region 604501	310 bp proximal
Rr604502	regulatory region 604502	994 bp proximal
Rr604503	regulatory region 604503	1600 bp proximal
Tssr44548	transcription start site region 44548	1624 bp downstream
Zfp984	zinc finger protein 984	Intron