rs49057729 SNP Detail

Summary

• ID
  rs49057729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151195006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA GGGGATCCCC AGGATCTTGT
  R
  TGAGGAAGCT CTTTTTCTCA TTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148064587	ENSMUSSNP2319068	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321431618	CHEV_4_150484658	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49057729					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151195006 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi15366	CpG island 15366			1313 bp distal
Rr605508	regulatory region 605508			1984 bp distal
Rr605509	regulatory region 605509			1483 bp distal