rs49055876 SNP Detail

Summary

• ID
  rs49055876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33970340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACACAGG GAAGAGGAGT
  GCATAACCAA GTCGTCCTGG TCAAGGCATT GTCCTGCCCG TCGTTGACCC GACATTGTTT
  CAACTCCCCT CTGTACTGCG CGGCAGTCCA GTGCGTTGCT ACCCCAACTG TGGCCCACTG
  AATCTTTGCA CTGTTAACTG CTGAGGGTAC AGTCTAGCTT TCTCCGGTAA TTGTCCTCAT
  R
  TGGAGTTGGA GGGAGTTTGT TCTGGAAGGT TTTCCTGGAA TTCAAGGTTA CTTAGAGGAA
  AGATAAAGGA GCACAATGTA TCTGTTCCTT TGGCCATAAA ATACAAGCAA AGATGTCACG
  CTGGGCTTTG ATCCCGCGAC AATGCTGTTT AGCAAAAGCA GCTGGTTTCA GTGTTTTCTG
  TTATGAAGCG TGGAGGCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss133109704	ENSMUSSNP1714992	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs49055876					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33970340 () rs orientation: forward

Symbol	Name	Function Class
Gm13853	predicted gene 13853	988 bp upstream
Gm67665	predicted gene, 67665	within coordinates
Rr628235	regulatory region 628235	1233 bp distal
Rr628236	regulatory region 628236	504 bp distal
Tssr60221	transcription start site region 60221	1196 bp upstream
Tssr60222	transcription start site region 60222	1029 bp upstream
Tssr60223	transcription start site region 60223	985 bp upstream