rs49055117 SNP Detail

Summary

• ID
  rs49055117
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58432257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGGTATC GTTCAGTCCT GTTCTAGTAT CCAGATGTTC
  ACGATGTTCG CTAAGTTTTT TGCAACACTA TCGATAATAA AGTTACAATG CAAATCAGAG
  W
  TATTTGGTGC TTAATTTCTT CTAAGGGATC ATTAGGAAGA TCTAATTTCT CTCTCTCTCT
  CTTTTTGATC TTCAATGAGC ATAAATCAAG GTAAGAGAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135207056	ENSMUSSNP3258048	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320783118	CHEV_3_58328758	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49055117					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58432257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13201	CpG island 13201	216 bp proximal
Eif2a	eukaryotic translation initiation factor 2A	995 bp upstream
Rr397681	regulatory region 397681	917 bp upstream
Rr577247	regulatory region 577247	495 bp proximal
Rr577248	regulatory region 577248	750 bp proximal
Rr577249	regulatory region 577249	1046 bp proximal
Serp1	stress-associated endoplasmic reticulum protein 1	Intron
Tssr886	transcription start site region 886	896 bp downstream
Tssr29207	transcription start site region 29207	277 bp upstream
Tssr29208	transcription start site region 29208	979 bp upstream
Tssr29209	transcription start site region 29209	1172 bp upstream
Tssr29210	transcription start site region 29210	1197 bp upstream
Tssr33349	transcription start site region 33349	277 bp downstream
Tssr33350	transcription start site region 33350	881 bp downstream
Tssr33351	transcription start site region 33351	906 bp downstream
Tssr33352	transcription start site region 33352	932 bp downstream
Tssr33353	transcription start site region 33353	1031 bp downstream
Tssr33354	transcription start site region 33354	1057 bp downstream