rs49054122 SNP Detail

Summary

• ID
  rs49054122
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86847965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTG TTTGTCCCCC TCCCCCCCCC
  M
  GGGAATGCCC TGCATTTAGA GGATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133360181	ENSMUSSNP2829488	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321847599	CHEV_6_86820977	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49054122					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86847965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Rr633547	regulatory region 633547			215 bp distal
Rr633548	regulatory region 633548			780 bp proximal
Tssr57515	transcription start site region 57515			170 bp downstream