rs49052725 SNP Detail

Summary

• ID
  rs49052725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26694026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGATAAG AGTCACACTT
  GAGGTGGTAG CTTCAAAATG GTGGGTTACC CAAGCCCTAG TGAGTAACCT CAGCCCATGA
  GTACATGGAT TGCACTAATA AGAAAGTGTA TTCTAACAAA AGAGAAGGCG CAATGTTGAG
  AGGGAGATGT GCTGTAGCAT AACCAAGGGA GAGGCACAGA GAAGTGACTG GAGGTGGGTC
  Y
  GATCAAGATC CGTTGAACAC ATGTATTTCA TTTTAAAAGA GTAAATTTAT TAAAAGGAAC
  AGAAGGGATT GTTTGTGGGC TGTCCTTCTG AATGGGGAAA GCAGCACCTT ACAGTGATTC
  AAACCTAGAA GGGAGGCACC AAGGAATCAC AAAGCATGAG GCCGGTGACC TTGAAACGAC
  CCCCCGGTGG TCTCAACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134696976	ENSMUSSNP4760917	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49052725					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26694026 () rs orientation: forward

Symbol	Name	Function Class
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	431 bp distal
Rr574325	regulatory region 574325	324 bp distal
Rr574326	regulatory region 574326	279 bp proximal
Spata16	spermatogenesis associated 16	Intron