rs49048149 SNP Detail

Summary

• ID
  rs49048149
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148172043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTA TGAAATAAGG ACGCTGCATG
  A
  GGAAATTAGG GAGAAGCAAT TGTTT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147991954	ENSMUSSNP7065176	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321416962	CHEV_4_147461695	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49048149					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148172043 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	Intron
Cpgi15288	CpG island 15288	91 bp proximal
Rr377389	regulatory region 377389	1646 bp downstream
Rr377390	regulatory region 377390	within coordinates
Rr604582	regulatory region 604582	1228 bp distal
Rr604583	regulatory region 604583	within coordinates
Rr604584	regulatory region 604584	435 bp proximal
Tssr40250	transcription start site region 40250	1710 bp downstream
Tssr44579	transcription start site region 44579	375 bp downstream
Tssr44580	transcription start site region 44580	450 bp downstream
Tssr44581	transcription start site region 44581	472 bp downstream
Tssr44582	transcription start site region 44582	1595 bp downstream
Tssr44583	transcription start site region 44583	1623 bp downstream