rs49044842 SNP Detail

Summary

• ID
  rs49044842
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103203694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTGTGCT CATAGCACCA
  TCTAGTGAGT AAAGTGGGTA ATAGCAGAAT CCCCTTTATC ACAGAAATAA GAACCCAAAA
  GTTTAAGACT CCTGTATGCT CACAGTCAGC TATTGGATGG ATCACAGGGC CCCCAATGGA
  AGAGCTAGAG AAAATACCCA AGGAGCTAAA GGGATCTGCA ACCCTATAGG TAGAACAACA
  W
  TATGAACTAA CCAGTACCCC AGAGCTCGTG TTTCTAGCTG CATATGTAGC AGAAGATGGC
  CTAGTCGGCT ATCATTGGGA AGAGAGGCCC CTTGGTCTTA CAAACTTTAT ATGCCTAAGT
  ACAGGGGAAC GCCAGGGCCA AAAAGTGGGA GTGGGTGGGT AGGGGAGTGG GGGGGAGGGC
  ATGGGGGACT TTTGGTATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147140855	ENSMUSSNP2838011	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49044842					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103203694 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oma1	OMA1 zinc metallopeptidase			Intron
				Noncoding-Transcript-Variant
Rr596392	regulatory region 596392			79 bp distal
Rr596393	regulatory region 596393			168 bp distal
Rr596394	regulatory region 596394			402 bp proximal