rs49042204 SNP Detail

Summary

• ID
  rs49042204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151040695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTAGAA CACAGCACAG
  ATGCCACACC CCGAGTCAGG CAGCCTCCTT GTGGCTCTCT TCCAGACTTG AGTTAAGAAA
  CAGTCTGTGT TGTAACCTGA CAGCTTTCAA ACAGTATGCT TTTACTTCAT GTTGCTTGTC
  CTGGCGGAAA GGTTATAAAA GCCGGAGAGC TGTTTGTTTG TTTGTTTGTT TGTTTTTTAT
  Y
  CATCTTTCTT TAGCTTGGGC AATTGGTCCA AACACTCTTC AGGGAGATTG GCCCAAGGAG
  GTAATTGTGA AGACTGCATG CTCTGAAAAG GCTCCTCTGA CCTCCCCTCT CACAGGACAT
  CCCTCTCAGC ATGCCCTGCC TCTCTCTGTC TCTGCATGTA TTTATGTATG TCTGCCATAT
  GCATGCCTAG GACCTGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148060544	ENSMUSSNP3356395	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49042204					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151040695 () rs orientation: forward

Symbol	Name	Function Class
Rr605469	regulatory region 605469	402 bp proximal