rs49041680 SNP Detail

Summary

• ID
  rs49041680
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65288708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACTTAATATT CTGCCTGTGG TGCGAAAGCC TGGTCATAGA
  CACAATGATC CCAGTGACTT CGCACATCAA ACCAACATGG CAGGGTCAAG CTGACCTCCC
  S
  GCCACCCAGG GCCAAAGCCA TACAGCTGAA CAGTGTGTGC TTTGGCCTCA CAGGCCAACA
  CTCATAGGCC TGGGTACTAT TTTTAGGTAA CTACCTTGGC T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135250819	ENSMUSSNP2847571	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49041680					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65288708 () rs orientation: forward

Symbol	Name	Function Class
Rr577674	regulatory region 577674	846 bp distal
Rr577675	regulatory region 577675	936 bp distal
Ssr3	signal sequence receptor, gamma	mRNA-UTR
Tssr33458	transcription start site region 33458	966 bp upstream
Tssr33459	transcription start site region 33459	494 bp upstream
Tssr33460	transcription start site region 33460	339 bp upstream
Tssr33461	transcription start site region 33461	230 bp upstream
Tssr33462	transcription start site region 33462	within coordinates
Tssr33463	transcription start site region 33463	109 bp downstream