rs49036139 SNP Detail

Summary

• ID
  rs49036139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124380596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCTAGC TGCATATGTA
  TCAAAAGATG GCCTAGTCGG CCATCACTGC AAAGAGAGGC CCATTGGACT TGCAAACTTT
  ATATGCCCCA GTACAGGGGA ACGCCAGGGC CAAAAAATGG GAATGGGTGG GTAGGGGAGT
  TGGGGGGGGG AGGGGTATAG GGGACTTTTG GGATAGCATT CTAAATGTAA TTGAGGAAAA
  Y
  ACGTAATAAT AAAAAATATA TATATAAAAA GAATACAGTT TGTCCAATTT GTAAGTCCCA
  GTTTATTTTA GTGGAACTAA AATCAATGTG AACCCAGGGG AAAACTATAG AATAAAACCA
  TTAATTGATT GATAGATTCG TTGATTAGTA TATGACCGAG TTTGGGAGCA GAGATGAATT
  AAGAAAAAGG TTGGTTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135790720	ENSMUSSNP5963126	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49036139					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124380596 () rs orientation: forward

Symbol	Name	Function Class
Gm9379	predicted gene 9379	1581 bp downstream
Rr584593	regulatory region 584593	979 bp distal
Rr584594	regulatory region 584594	668 bp proximal
Rr584595	regulatory region 584595	780 bp proximal