rs49034551 SNP Detail

Summary

• ID
  rs49034551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14296942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCGCAGGA CGCGGCCGCT
  GTCAGGGTCC AAGATGCCAC CTGGCCCTGG GGCAGACACG ACCCCGATCT CTCAGGCCTG
  CTCCCGGGCC CCAGGGCTCC CTCCCGGCCT TGCCCGACGT CGGGACCGGT TACCTGCACC
  GCTGCGGGCG CCGAGCGGTG AAAACGCCTC TTCAGCAGCC CGGAAGCCTG GAAGGGAGAG
  R
  AAAAAGGGTT CAGAAAGGGC ACAGGGCCTA CAGTGGACGC GCTAGGGGCC GCTACCTACC
  TGCCGCAAGG GTCCCCGCAC CAGACCAGCC ACCACCGCCA TCTTGCCCGT GTCCTCTACT
  AGCTGCCGAA TGACAACACA GAAGCGCCGC AGAGCCCGTC TGACGCAGCC AATAGTAGGG
  CGTGACACCT TTACGTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62078228	NES17151088	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49034551					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62078228	NES17151088	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14296942 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6157	CpG island 6157			within coordinates
Pdhb	pyruvate dehydrogenase (lipoamide) beta			Intron
				Noncoding-Transcript-Variant
Rr389295	regulatory region 389295			within coordinates
Rr487855	regulatory region 487855			1903 bp distal
Rr487856	regulatory region 487856			1114 bp distal
Rr487857	regulatory region 487857			995 bp distal
Rr487858	regulatory region 487858			184 bp distal
Tssr127398	transcription start site region 127398			127 bp downstream
Tssr127399	transcription start site region 127399			155 bp downstream