rs49025202 SNP Detail

Summary

• ID
  rs49025202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127645722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATCACTG TGGGCGTGGG
  CTTTAATACC CTCATCATAG CTGCCTGGAA GCTAATCTTC TCCAGATGAA GATGTAGAAC
  TCTCAGCTCC TCCTGCACCA TATCTGCTTG GATGCTGCCA TGCTCCTGTC TTGATGATAA
  TGGACTGAAT CTCTGAACCT GTAAGCCAGC CCCAATTAAA TGTTGTCCTT ATAAGAGTTG
  Y
  CTTGGCCATG GTGTCTGTTT ACAGCAGTAA AACCCTAACT AAGACAACTA CCAATTGAAA
  TCGTTTATAC TACACTTGGT AAAGCTTCAC AGTCCTACAG GGACACAACT GGAGGAGAAC
  TTTAGGACCT GTGCCATTAG CCAACAGCCA TGCTGGACGC ACTGAGGGGG AACCAATGTC
  AGAGCCAGAG CTAGATCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135873098	ENSMUSSNP1660539	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49025202					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127645722 () rs orientation: forward

Symbol	Name	Function Class
Rr584881	regulatory region 584881	1599 bp distal
Rr584882	regulatory region 584882	1634 bp distal
Rr584883	regulatory region 584883	63 bp distal
Rr584884	regulatory region 584884	694 bp proximal
Rr584885	regulatory region 584885	1331 bp proximal
Rr584886	regulatory region 584886	1439 bp proximal