rs49024198 SNP Detail

Summary

• ID
  rs49024198
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54506114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGACTAC AGCTGGCTCT
  GCCAGGCATA ATGGGAGAGA ACAGAGGATG CCCTGGGCAC AAAGAGGCTT CAGCAACCAC
  AATAGCTTTG TCACGCTATA TTTATTAGTT AAACGTGGGT CACAGCATCA CATTCGTGAT
  CAAGGGTCAG GAATTAAACT GTGTGAGTGT CAGTGAGGCA AGGAGGATGA GGGCCACCTT
  W
  GAGGGTGTGT CTCCCATGCT AACCTCTGAG AAATTATCCT CAGCGTGTGA ATGGTGTCAA
  GAATCGTGAA GGATTTGAAA TAGGTGAGAT ATAGGATTAT TGGGGCCATG CGGCTTCCAA
  GGTCTGTTCT GAATGATTCA TGAAAAATGC AGCTTCCCGT TTGCATCTTG CGATCTCTGT
  TCTAAGCGTG CTTTCTCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss135184592	ENSMUSSNP3417461	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs49024198					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54506114 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576818	regulatory region 576818	549 bp distal