rs49022440 SNP Detail

Summary

• ID
  rs49022440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59802720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGGGAC AATGCCTTGT
  CGGTACTGAG CACTCTCATG CAGTCCTGGC AGAGTTGCCA GTAAGGGTGA CATGGTTCTT
  CTTTGGCAAA ATACTAAATT GTGGGGCCTG GGGCCCTATC TCCTGATAGG TCCCAGGCTT
  AGTGCCTGCC ACTCCGTGTG GATGGGAAAG GGCCCATGCG ACTGGGTCTT GCTTCAAAGG
  Y
  GGATAGTTTA TTCTGGGGCG AGTATGTCCG GCCATGTCCT GAGGAACAAA ATGGGTTGGG
  GGTACTCTGA AAGACATGCT CTACTGTGGG AGTTAATCAT ATATGTTTTA AATCGAGACA
  GGGACTCACT ATGTAGCCCT GGCTGTCCTG GAATTCACTT ATGTAGGCCA AGCTGGTGGT
  GATATCAGTG AGGCAGGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146403203	ENSMUSSNP866459	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49022440					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59802720 () rs orientation: forward

Symbol	Name	Function Class
Rr398296	regulatory region 398296	686 bp upstream
Rr593142	regulatory region 593142	within coordinates